FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721630

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721630
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13605141
Sequences flagged as poor quality0
Sequence length30-51
%GC31

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG318450.23406593140049048No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTTA170670.12544522691826568No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT163430.12012370911848691No Hit
CGGGAGGCGGAGTTTGTAGTGAGTCGAGATTACGTCGTTGTATTTTAGTTT145260.10676846348009182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)