FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001721634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43154570
Sequences flagged as poor quality0
Sequence length30-101
%GC33

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT1311390.3038820685735022No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTT939840.21778458225861133No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA599720.13897021798618317No Hit
TGGATGTTAGAGGGGTGTTTTGGGTAATTTTTGGGATTTAGAAGTGAAAG500970.11608735760778059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)