FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001721644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62185826
Sequences flagged as poor quality0
Sequence length30-51
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATAA759640.12215645410901192No Hit
CGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG728100.11708455878675632No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTTA716650.1152433031925957No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)