FastQCFastQC Report
Sun 14 May 2023
EGAF00001721648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70738067
Sequences flagged as poor quality0
Sequence length30-51
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG1267170.17913551412141357No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT1088220.15383796110798448No Hit
TGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT983500.13903405078908926No Hit
TGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAG794140.11226487147295106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)