FastQCFastQC Report
Sat 13 May 2023
EGAF00001721652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56287797
Sequences flagged as poor quality0
Sequence length30-51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAG1640000.29135977732438173No Hit
CGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG1594460.28326921375160585No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTTA1579130.2805457104672261No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAT1354360.24061343171771316No Hit
CGGAATGGATTGGATTGGAATAAAACGGATTCGAATGTAAAGTATTGTAAT1081410.19212157121729243No Hit
TGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG965990.17161623859608505No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG866800.1539943018199842No Hit
CGGAATAGAATGGAATGTAATGGAATGGAACGGAATGGAATGGAATGGAAG840130.14925615227044683No Hit
TGGTATGAGATTGATAGTTAATAAGTATTGTAAGGGAAAGTTGAAAAGAAT658170.11692942965950506No Hit
CGGGATGGTTTCGATTTTTTGATTTCGTGATTCGTTCGTTTCGGTTTTTTA604980.10747977932055149No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)