FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56287797
Sequences flagged as poor quality0
Sequence length30-51
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG5834571.036560375599706No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA2857640.5076837524836867No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG2612990.4642196247261196No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG1368070.2430491283927847No Hit
AATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCG948770.16855696093417905No Hit
AAATAATCTCGATCTCCTAACCTCGTAATCCGCCCGCCTCGACCTCCCA851100.15120506492730565No Hit
AATAATCAATACTATATCCGACAATATTCGTATTTTATTTTCTTCCTAA787340.13987756529181627No Hit
AATTTATTCCATTCCATTCCATTCCATTCCATTCCAATTAATTCCATTA683150.12136733651167766No Hit
AACAAACTACACAAACCCCACCCATTTACCTCTTAACAATTTCACACCC618430.10986928481141302No Hit
ACGCATACCGTTCCATTCCATTCCATTCGCTTCCGTTCCATTCGAATCG569290.10113915099573002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)