FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56037331
Sequences flagged as poor quality0
Sequence length30-51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG4364220.7788058285645332No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAG2598590.4637247980279432No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAT2113390.3771396607022558No Hit
CGGAATGGATTGGATTGGAATAAAACGGATTCGAATGTAAAGTATTGTAAT1602550.2859790021048647No Hit
TGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG1509360.26934901664035354No Hit
CGGAATAGAATGGAATGTAATGGAATGGAACGGAATGGAATGGAATGGAAG1478910.2639151389990362No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT1238210.22096163002481328No Hit
TGGTATGAGATTGATAGTTAATAAGTATTGTAAGGGAAAGTTGAAAAGAAT752370.13426228311980098No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATT657580.1173467737069776No Hit
CGGAACGGAATGGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAAT629130.11226980100105054No Hit
CGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAG619980.1106369609216399No Hit
CGGAATAGAATGGAATGTAATGGAATGGAACGGAATGGAATGGAATAGAAG595520.1062720135618165No Hit
CGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT580960.1036737456321751No Hit
CGGGAGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG580630.10361485631783571No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)