FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56037331
Sequences flagged as poor quality0
Sequence length30-51
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG11253782.0082648118983397No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA3861940.6891727230906126No Hit
AATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCG2943170.5252159493463384No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG2682650.4787255124623976No Hit
AATTTATTCCATTCCATTCCATTCCATTCCATTCCAATTAATTCCATTA1299160.23183830793083277No Hit
AATTTATTACATTCCATTCCATTCCATTCCATTCCATTCTATTACATTC908330.16209372998153676No Hit
ACGCATACCGTTCCATTCCATTCCATTCGCTTCCGTTCCATTCGAATCG811980.14489983471910894No Hit
AATAATCAATACTATATCCGACAATATTCGTATTTTATTTTCTTCCTAA793920.14167698315253452No Hit
AACAAACTACACAAACCCCACCCATTTACCTCTTAACAATTTCACACCC772040.1377724431593646No Hit
AATTTATTCCATTACATTCCATTCCATTCCATTCCATTAATTCCAATTA737500.13160869492517407No Hit
AATTTATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTC720900.12864638396143455No Hit
AATTTATTCCGTTCCATTCCATTCCATTCCATTCCATTCCAATTAATTC707230.12620693872804184No Hit
ATTAATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCC645170.11513217858288075No Hit
AATTTATTCCATTCCATTCCATTCCATTCCATTCCATTCCAATTAATTC617610.1102140285732024No Hit
AATAATTCCATTCCATTACATTCCATTCCATTACATTCCCCTACACTCG584460.10429832926910812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)