FastQCFastQC Report
Tue 27 Sep 2022
EGAF00001721658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52996066
Sequences flagged as poor quality0
Sequence length30-51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG5189610.9792443839133268No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAG2528310.4770750342110299No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATAA2096980.3956859741249473No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAT2095800.3954633160884055No Hit
TGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG1846090.3483447243046305No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT1639030.3092738996890826No Hit
CGGAATAGAATGGAATGTAATGGAATGGAACGGAATGGAATGGAATGGAAG1382400.26084955060626575No Hit
CGGAACGGAATGGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAAT1313180.2477882037508218No Hit
CGGAATTGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAATGGAAT1227250.23157379266604433No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATT1212230.22873962003141896No Hit
CGGAATGGATTGGATTGGAATAAAACGGATTCGAATGTAAAGTATTGTAAT1174620.22164286684977713No Hit
TGGTATGAGATTGATAGTTAATAAGTATTGTAAGGGAAAGTTGAAAAGAAT784440.14801853405496174No Hit
CGGGAGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG646080.12191093580417836No Hit
CGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAG639030.12058064838246672No Hit
CGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT597200.112687609680311No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATTCGAGTGTAAT591790.11166677919074221No Hit
CGGGGACGCGGAAGTTTGTTTGAGGGAGGAGGGGTGGAAGGAGAGATAGTT590030.11133467906844256No Hit
CGGAATAGAATGGAATGTAATGGAATGGAACGGAATGGAATGGAATAGAAG562590.10615693625258903No Hit
CGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGGAATGGAATTTAGTG560250.10571539404453154No Hit
CGGTACGAGATCGATAGTTAATAAGTATCGTAAGGGAAAGTTGAAAAGAAT542680.1024000536190743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)