FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47837721
Sequences flagged as poor quality0
Sequence length30-51
%GC35

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG4062650.8492565939752857No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTTA822150.1718622841585618No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGTG578860.121004928307517No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTTGAGGCG541320.1131575645085601No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTTA488320.10207844140401254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)