FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47837721
Sequences flagged as poor quality0
Sequence length30-51
%GC27

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA2932310.6129702541640728No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCA1804590.3772315993063298No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG1639520.3427253568371286No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG1309170.27366897348642505No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCATATTAACCA1121370.23441125048578298No Hit
ACTAATTTTTATATTTTTAATAAAAACGAAATTTCACCATATTAACCAA742480.1552080626917825No Hit
ACTAATTTTTATATTTTTAATAAAAATAAAATTTCACCATATTAACCAA740180.15472727055705685No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACTATATTAACCA735500.15374896308291944No Hit
ACTAATTTTTATATTTTTAATAAAAACAAAATTTCACCATATTAACCAA700100.14634894500931597No Hit
ACTAATTTTTTATATTTTTAATAAAAACAAAATTTCACCGTATTAACCA687030.14361679144372283No Hit
ACTAATTTTTTATATTTTTAATAAAAATAAAATTTCACCGTATTAACCA659080.13777412180651333No Hit
ACTAATTTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACC604420.126347992204729No Hit
AATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACAA602020.12584629606414569No Hit
ACTAATTTTTTATATTTTTAATAAAAACAAAATTTCACCATATTAACCA581180.12148990124341416No Hit
ACTAATTTTTTATATTTTTAATAAAAATAAAATTTCACCATATTAACCA511550.10693444196474158No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA479180.10016781526862452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)