FastQCFastQC Report
Sat 1 Apr 2023
EGAF00001721662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47880390
Sequences flagged as poor quality0
Sequence length30-51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAG2073600.4330791791796182No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAT1691090.35319052330191963No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTTA1566160.3270984217129393No Hit
CGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG1427690.29817844006700867No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATAA1277250.2667584787843207No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT1175420.24549089930136328No Hit
CGGAATTGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAATGGAAT936430.19557693661225398No Hit
CGGAATAGAATGGAATGTAATGGAATGGAACGGAATGGAATGGAATGGAAG842950.1760532861156728No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATT830620.17347811912141903No Hit
CGGAACGGAATGGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAAT809250.16901491403892074No Hit
TGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG797190.16649613756278928No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTTA701270.14646288386539877No Hit
CGGAATGGATTGGATTGGAATAAAACGGATTCGAATGTAAAGTATTGTAAT685130.1430919840043074No Hit
CGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAG646440.13501143161114604No Hit
CGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT637360.13311503937206862No Hit
TGGTATGAGATTGATAGTTAATAAGTATTGTAAGGGAAAGTTGAAAAGAAT542380.11327810821925219No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)