FastQCFastQC Report
Sat 1 Apr 2023
EGAF00001721663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47880390
Sequences flagged as poor quality0
Sequence length30-51
%GC36

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG8869311.8523888381026137No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA4359700.9105397846592311No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG2426800.5068463310344798No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG2359930.4928802793795121No Hit
AATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCG2105860.43981680182638444No Hit
AAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCA1104030.23058082860227327No Hit
AATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTA1090790.2278156046765701No Hit
AATTTATTCCATTCCATTCCATTCCATTCCATTCCAATTAATTCCATTA876720.18310627795638257No Hit
AATAACTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG863680.18038282478484408No Hit
AATTTATTCCATTCCATTCCATTCCAATTAATTCCATTAAATTCCATTC794650.16596564898489757No Hit
AATAACTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA674210.14081130082691473No Hit
AACAAACTACACAAACCCCACCCATTTACCTCTTAACAATTTCACACCC487630.10184336426666532No Hit
AATAATTCCATTCCATTACATTCCATTCCATTACATTCCCCTACACTCG483910.1010664282392019No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)