FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001721665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62711680
Sequences flagged as poor quality0
Sequence length30-51
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG9289871.4813620046536786No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA4899020.7811973782236419No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG2726740.43480576505046586No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG2007240.32007434659699757No Hit
AATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCG1884390.3004846943982365No Hit
AATTTATTCCATTCCATTCCATTCCATTCCATTCCAATTAATTCCATTA1196300.19076191229448802No Hit
AATTTATTCCATTCCATTCCATTCCAATTAATTCCATTAAATTCCATTC1105830.17633557257595395No Hit
AAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCA1001030.15962417208405197No Hit
AATAATCAATACTATATCCGACAATATTCGTATTTTATTTTCTTCCTAA784480.125093124598161No Hit
AAATAATCTCGATCTCCTAACCTCGTAATCCGCCCGCCTCGACCTCCCA747030.11912135028115975No Hit
AACAAACTACACAAACCCCACCCATTTACCTCTTAACAATTTCACACCC700400.1116857338218335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)