FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001721666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50577209
Sequences flagged as poor quality0
Sequence length30-51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAG3211530.6349757259242992No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATAA2904500.5742705177741223No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAT2573620.5088497469285029No Hit
CGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG1988200.39310196021294885No Hit
CGGAATAGAATGGAATGTAATGGAATGGAACGGAATGGAATGGAATGGAAG1300690.2571691925507396No Hit
CGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAG1255250.24818490874021934No Hit
CGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT1057520.20909022480856942No Hit
TGGTATGAGATTGATAGTTAATAAGTATTGTAAGGGAAAGTTGAAAAGAAT1023240.20231246844799206No Hit
TGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG984250.19460346259913236No Hit
CGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGGAATGGAATTTAGTG760220.1503088080641223No Hit
TGGAGAATTTGGGAGGGAGATGGGGGAGAGAGAGAGAGAGAGAGAG754740.14922531609049444No Hit
CGGAACGGAATGGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAAT708960.14017380832540602No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGAAATGGAATGGAAT564770.1116649200631059No Hit
CGGAATAGAATGGAATGTAATGGAATGGAATGGAATGGAATGGAATGGAAG543850.1075286696820301No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT533610.10550404234444807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)