FastQCFastQC Report
Wed 14 Sep 2022
EGAF00001721667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50577209
Sequences flagged as poor quality0
Sequence length30-51
%GC36

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG11128532.200305279795095No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA5295451.0470032065233177No Hit
AAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCA2470380.48843739084139653No Hit
AATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCG1624790.3212494386552647No Hit
AATTTATTCCATTCCATTCCATTCCATTCCATTCCAATTAATTCCATTA1286810.25442487346425147No Hit
AATTTATTCCATTCCATTCCATTCCAATTAATTCCATTAAATTCCATTC1228380.24287223915420084No Hit
AACAAACTACACAAACCCCACCCATTTACCTCTTAACAATTTCACACCC945150.1868727078237947No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG676210.13369855976038536No Hit
AATTTATTCCATTCCATTCCATTCCATTCCAATTAATTCCATTAAATTC610980.12080144635897168No Hit
AATAATCAATACTATATCCGACAATATTCGTATTTTATTTTCTTCCTAA608900.12039019393102533No Hit
ACCCCACAACACACACACACCAACAACACACCCTTCTTTCTCTTTCTCT565510.11181123102304835No Hit
ATTAATTCCATTCCATTCCATTCCATTCCATTCCCTTCCATTCCATTCC555440.10982021566275038No Hit
ACCCCACAACACACACACACCAACAACACACCCTTCTTTCTCTCTCTCT550390.10882174221989988No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCAACACTCG542660.10729338584104157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)