FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28919256
Sequences flagged as poor quality0
Sequence length30-51
%GC26

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT909640.31454474485788986No Hit
AAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA726840.2513342666906784No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG533070.18433046825271024No Hit
AAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCA520310.17991818323403616No Hit
AAATAATAAATTACAATATAAAAAATTATTCCAAAACCTAATAAAATAA494020.17082735461797496No Hit
AACTCTACCATCTTAACAAACCCTATTCTTAAATAAATATAAATATAAT477720.1651909717179446No Hit
ATAAAAATAACAATAATTATAATAACAAAAATAAAATATACTCATATAT403340.13947108459498406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)