FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25935986
Sequences flagged as poor quality0
Sequence length30-51
%GC27

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT951450.3668455095557192No Hit
AAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA764290.2946832250757692No Hit
AAATAATAAATTACAATATAAAAAATTATTCCAAAACCTAATAAAATAA484840.18693717678595292No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG468530.18064861694481174No Hit
AACTCTACCATCTTAACAAACCCTATTCTTAAATAAATATAAATATAAT420170.16200270928585478No Hit
ATAAAAATAACAATAATTATAATAACAAAAATAAAATATACTCATATAT402860.15532858477021078No Hit
AAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCA327670.12633797689434287No Hit
AATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACAA300560.1158853185685711No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)