FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001721689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19318551
Sequences flagged as poor quality0
Sequence length30-51
%GC27

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG780390.4039588683436972No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA667330.34543481030228407No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG463400.23987306294348887No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCA404030.20914094436999958No Hit
AATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTA343740.17793259960335533No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA297900.15420411189224284No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCATATTAACCA244390.12650534711428407No Hit
ACTACGTTTATTTATTTATTTTTTTAATTATTTTACTTTTTTTTAATTT243640.12611711923942948No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA223940.11591966705991562No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)