FastQCFastQC Report
Wed 27 Sep 2023
EGAF00001721693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96712654
Sequences flagged as poor quality0
Sequence length30-51
%GC23

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA1650870.17069844862286584No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA1583570.16373969015471335No Hit
AAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCA1572660.1626116061296384No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG1554270.1607100969434672No Hit
AACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT1418780.14670055482088207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)