FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001721712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17899630
Sequences flagged as poor quality0
Sequence length30-51
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG728990.4072654015753398No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTTA384460.21478656262727217No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTTA224810.12559477486406145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)