FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001721713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17899630
Sequences flagged as poor quality0
Sequence length30-51
%GC28

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG595120.3324761461549764No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA481770.26915081484924547No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG399520.22320014436052588No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCA287680.16071840591118364No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCATATTAACCA186150.10399656305744868No Hit

[OK]Adapter Content

Adapter graph