FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001721723

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721723
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47517092
Sequences flagged as poor quality0
Sequence length30-51
%GC25

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG1000670.21059159091638013No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA699030.14711127524386383No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG602910.1268827646270946No Hit
AATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCG483020.10165184350927872No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)