FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721730

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721730
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30128659
Sequences flagged as poor quality0
Sequence length30-51
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG801050.26587642018849894No Hit
CGGGAGGCGGAGTTTGTAGTGAGTCGAGATTACGTCGTTGTATTTTAGTTT710590.23585185122245236No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTTA415490.137905241650483No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT390430.12958757971936288No Hit
CGGAATGGAATGGAATGGAATGGAATTAATTTTATTGTAATGGAATGGAAT332720.11043305976545453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)