FastQCFastQC Report
Wed 14 Sep 2022
EGAF00001721733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74585297
Sequences flagged as poor quality0
Sequence length30-51
%GC27

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTACGTTTATTTATTTATTTTTTTAATTATTTTACTTTTTTTTAATTT2476070.33197829861829203No Hit
AATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTA1919590.25736841940845256No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG1603010.21492305648390728No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG1501230.20127693531876664No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA1465880.19653739529923706No Hit
ACTACATTTATTTATTTATTTTTTTAATTATTTTACTTTTTTTTAATTT1353170.181425837856488No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA1315380.17635915561213092No Hit
AAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA817890.10965834191154324No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCA813590.10908182077762592No Hit
ATAAACGACCTCTTTTTACTCTCTTCTCCAACCTCCCTCACTATCCCTC800350.10730667198388981No Hit
AATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCG784780.10521912918037989No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)