FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53566790
Sequences flagged as poor quality0
Sequence length30-51
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG2021070.37729906906872707No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG973130.1816666632441481No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA931890.17396786329739006No Hit
AATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTA889410.1660375766403027No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA789280.1473450247812124No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA718850.13419695300017043No Hit
AATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCG676810.12634880678868382No Hit
ATAAACGACCTCTTTTTACTCTCTTCTCCAACCTCCCTCACTATCCCTC613580.11454485139019904No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG608220.11354423141651758No Hit
ACTACGTTTATTTATTTATTTTTTTAATTATTTTACTTTTTTTTAATTT563820.10525551372408165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)