FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53688136
Sequences flagged as poor quality0
Sequence length30-51
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT978310.182220891408858No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG954210.17773200395707536No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATT745290.13881837879415296No Hit
CGGAATGGAATGGAATGGAATGGAATTAATTTTATTGTAATGGAATGGAAT729030.13578977672087553No Hit
CGGAACGGAATGGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAAT631590.11764051558802488No Hit
CGGAATTGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAATGGAAT580900.1081989510680721No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTTA543330.10120112942643418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)