FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001721750

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721750
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82989998
Sequences flagged as poor quality0
Sequence length30-51
%GC31

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG4863030.5859778427757041No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATAA1145710.1380539857345219No Hit
TGGGTTTTGTTATTTTAATAAATTTTGTTTTTGGGTGGGTGTGGGTATAAT1054690.1270863990140113No Hit
TGGATGTTAGAGGGGTGTTTTGGGTAATTTTTGGGATTTAGAAGTGAAAGG988170.11907097527583986No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTTGAGGCG884050.10652488508313977No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTTA842030.1014616243273075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)