FastQCFastQC Report
Sat 1 Apr 2023
EGAF00001721756

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721756
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41353091
Sequences flagged as poor quality0
Sequence length30-51
%GC33

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG886960.21448457141934082No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTTA531080.1284257082499589No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAG418690.10124757058668238No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)