FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24997808
Sequences flagged as poor quality0
Sequence length30-51
%GC34

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG1071560.42866158504777696No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTTA458790.18353209209383478No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAG319370.12775920192682494No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTTA288130.11526210618147No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAT278790.11152577858026592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)