FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47308605
Sequences flagged as poor quality0
Sequence length30-51
%GC27

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG1849300.3909014015526351No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG1585270.3350912587678288No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA1313590.2776640740093689No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCA819530.17323064165599472No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCATATTAACCA521320.11019559760851118No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA494480.10452221112839831No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA481410.10175950020086198No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)