FastQCFastQC Report
Tue 27 Sep 2022
EGAF00001721765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38969754
Sequences flagged as poor quality0
Sequence length30-51
%GC29

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA973930.24991946318162545No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG563450.1445864913594271No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA551510.14152257671423843No Hit
AACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT530390.13610298900013584No Hit
AAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA526550.13511760941575357No Hit
AATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTA501170.12860486622522688No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG490040.12574880508611885No Hit
ACTAATTTTTTATATTTTTAATAAAAACAAAATTTCACCATATTAACCA467980.120088004661256No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)