FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19280165
Sequences flagged as poor quality0
Sequence length30-51
%GC27

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA597080.30968614635818725No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA442630.22957791076995449No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG439530.22797004071282587No Hit
AAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA332790.17260744397156352No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG321050.16651828446488917No Hit
ACTAATTTTTTATATTTTTAATAAAAACAAAATTTCACCATATTAACCA318530.1652112417087717No Hit
AATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTA317740.16480149417808404No Hit
AACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT309280.1604135649254039No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCA254450.13197501162464118No Hit
ACTAATTTTTATATTTTTAATAAAAACAAAATTTCACCATATTAACCAA204650.1061453571585098No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCATATTAACCA202340.10494723463206877No Hit
AACTCTACCATCTTAACAAACCCTATTCTTAAATAAATATAAATATAAT193720.10047631853773037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)