FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51301676
Sequences flagged as poor quality0
Sequence length30-51
%GC29

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG1899270.37021597501025116No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA1685230.3284941412050554No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA1460700.28472753989557764No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG1427370.2782306761283978No Hit
ACTAATTTTTTATATTTTTAATAAAAACAAAATTTCACCATATTAACCA1016060.1980559075691796No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCA1006890.19626844160023152No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCATATTAACCA749420.14608099743174083No Hit
ACTAATTTTTATATTTTTAATAAAAACAAAATTTCACCATATTAACCAA714650.13930344108056042No Hit
ACTAATTTTTTATATTTTTAATAAAAACAAAATTTCACCGTATTAACCA589460.11490072955901089No Hit
ACTAATTTTTATATTTTTAATAAAAATAAAATTTCACCATATTAACCAA588170.11464927578584373No Hit
AACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT546370.10650139383360498No Hit
AATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACAA523180.10198107367876247No Hit
AATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACAA522810.10190895127870675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)