FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45208268
Sequences flagged as poor quality0
Sequence length30-51
%GC31

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG844510.1868043252619189No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAG548540.12133621221675646No Hit
CGGATGATTTTATTTTATTGTATTTTATTTTATTTTATTTTTTTGTATTCG470050.10397434380808394No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTTA466290.10314263753700983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)