FastQCFastQC Report
Wed 14 Sep 2022
EGAF00001721771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45208268
Sequences flagged as poor quality0
Sequence length30-51
%GC27

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG2164950.4788836413728568No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA742060.1641425413599123No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG668250.14781588182055547No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA646380.14297827114279185No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG564410.12484663203642307No Hit
AATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCG470500.10407388312244123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)