FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721780

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721780
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39118694
Sequences flagged as poor quality0
Sequence length30-51
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT620210.15854568150971501No Hit
TGGAATGGAATGGAATGGAATGGAATTAATTTTATTGTAATGGAATGGAAT612610.1566028763639195No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATTAATTTGATTGTAATGGAAT499620.1277189877555728No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATT481580.12310738185686873No Hit
TGGAATTGAATGGAATGGAATGGAATTAATTTGATTGTAATGGAATGGAAT462040.11811232757412607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)