FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50027455
Sequences flagged as poor quality0
Sequence length30-51
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA1532280.3062878173594879No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG1372670.27438333611014193No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG1340170.2678869033013972No Hit
ACTACGTTTATTTATTTATTTTTTTAATTATTTTACTTTTTTTTAATTT1130910.22605787162269197No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCA895530.17900770686815867No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA641160.1281616264509158No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCATATTAACCA599190.119772233066823No Hit
ATAAACGACCTCTTTTTACTCTCTTCTCCAACCTCCCTCACTATCCCTC589990.11793324285634758No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC571810.11429923828825592No Hit
AAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA538230.1075869240200206No Hit
AACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT521190.10418079432583568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)