FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51198170
Sequences flagged as poor quality0
Sequence length30-51
%GC27

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT922320.1801470638501337No Hit
TGGAATGGAATGGAATGGAATGGAATTAATTTTATTGTAATGGAATGGAAT839870.16404297262968578No Hit
TGGGTTTTGTTATTTTAATAAATTTTGTTTTTGGGTGGGTGTGGGTATAAT614760.12007460422901835No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATT611930.11952185009737654No Hit
TGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG608770.1189046405369567No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATTAATTTGATTGTAATGGAAT564620.1102812854443821No Hit
TGGAATTGAATGGAATGGAATGGAATTAATTTGATTGTAATGGAATGGAAT521970.10195090957352576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)