FastQCFastQC Report
Fri 31 Mar 2023
EGAF00001721793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55607521
Sequences flagged as poor quality0
Sequence length30-51
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA2075400.3732228955144395No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA1034170.18597664154098867No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG996590.1792185628990726No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG730460.13135992881250722No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCA612420.11013258440346586No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)