FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26511519
Sequences flagged as poor quality0
Sequence length30-51
%GC33

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG481250.18152486849206945No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT455790.17192149570909157No Hit
CGGAATGGAATGGAATGGAATGGAATTAATTTTATTGTAATGGAATGGAAT336570.12695236361220946No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATT306780.11571573850596792No Hit
CGGAACGGAATGGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAAT302450.1140824861827042No Hit
CGGAATTGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAATGGAAT285500.10768903886646404No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)