FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27015615
Sequences flagged as poor quality0
Sequence length30-51
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG565980.20950106077540712No Hit
CGGAATGGAATGGAATGGAATGGAATTAATTTTATTGTAATGGAATGGAAT517810.1916706319659945No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT513360.1900234364459221No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAG501170.18551123118981375No Hit
CGGAATTGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAATGGAAT435360.1611512453075749No Hit
CGGAACGGAATGGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAAT420850.15578027744324902No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAT394790.1461340043526679No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATT373330.13819045022665594No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG340950.1262047893412754No Hit
CGGATGATTTTATTTTATTGTATTTTATTTTATTTTATTTTTTTGTATTCG313300.11596996773902797No Hit
TGGAATGGAATGGAATGGAATGGAATTAATTTTATTGTAATGGAATGGAAT280580.10385845371278797No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)