FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721811

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721811
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35741950
Sequences flagged as poor quality0
Sequence length30-51
%GC27

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA2575270.7205174871544502No Hit
AATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTA1001150.28010503064326375No Hit
ACCTATTTATCTATTTATTAACTTTAAATCCAAATTATAAAACCAATTA958330.26812471059916987No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG809550.22649855421990128No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA764790.21397545461285689No Hit
ACTAATTTTTTATATTTTTAATAAAAACAAAATTTCACCATATTAACCA745240.20850569149137077No Hit
AACACAATAACTCACACCTATAATCCCAACACTTTAAAAAACCAAAACA639450.17890741831377416No Hit
AATAACTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA455640.12748045364061No Hit
AACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT439250.12289480568351756No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG427140.11950663016427475No Hit
ACTAATTTTTATATTTTTAATAAAAACAAAATTTCACCATATTAACCAA424330.11872043914783609No Hit
ACTACATTTATTTATTTATTTTTTTAATTATTTTACTTTTTTTTAATTT405660.11349688531263682No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCA404900.11328425001993454No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA378040.10576927112258844No Hit
ATTAATTCCATTCCATTCCATTCCATTCCATTCCCTTCCATTCCATTCC366470.1025321785744762No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)