FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001721813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22520325
Sequences flagged as poor quality0
Sequence length30-51
%GC27

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA1924700.8546501882188645No Hit
AATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTA757630.336420544552532No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA636070.28244263792818264No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG631870.2805776559618922No Hit
ACTAATTTTTTATATTTTTAATAAAAACAAAATTTCACCATATTAACCA557100.2473765365286691No Hit
AACACAATAACTCACACCTATAATCCCAACACTTTAAAAAACCAAAACA401580.17831891857688556No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCA369060.16387862963789376No Hit
AATAACTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA348520.15475797973608285No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG334400.14848808798274446No Hit
ACTACATTTATTTATTTATTTTTTTAATTATTTTACTTTTTTTTAATTT327690.14550855726993284No Hit
ACTAATTTTTATATTTTTAATAAAAACAAAATTTCACCATATTAACCAA316570.14057079549251622No Hit
AACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT290650.12906119250055229No Hit
ATTAATTCCATTCCATTCCATTCCATTCCATTCCCTTCCATTCCATTCC281840.12514917080459542No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCATATTAACCA271740.12066433321899217No Hit
ACTAATTTTTTATATTTTTAATAAAAACAAAATTTCACCTTATTAACCA263030.11679671585556603No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA248870.11050906236921537No Hit
ACTAATTTTTATATTTTTAATAAAAATAAAATTTCACCATATTAACCAA241280.10713877353013333No Hit
AAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA239920.10653487460771548No Hit
AATAATTCCATTCCATTACATTCCATTCCATTACATTCCCCTACACTCA228540.10148166156571897No Hit
ATAAACGACCTCTTTTTACTCTCTTCTCCAACCTCCCTCACTATCCCTC227450.10099765434113406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)