FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52115309
Sequences flagged as poor quality0
Sequence length30-51
%GC26

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA1807960.3469153372956112No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG1532730.2941036001532678No Hit
ACTACATTTATTTATTTATTTTTTTAATTATTTTACTTTTTTTTAATTT1474430.28291686805502775No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA1279320.24547873255438246No Hit
AACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT948610.18202137110997463No Hit
AAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA913650.17531316949497508No Hit
ACTAATTTTTTATATTTTTAATAAAAACAAAATTTCACCATATTAACCA899640.1726248999118474No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCA757050.14526441740947943No Hit
ACTAATTTTTATATTTTTAATAAAAACAAAATTTCACCATATTAACCAA703620.135012151611727No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCATATTAACCA584190.112095660797099No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA577750.11085993944696748No Hit
ATAAACGACCTCTTTTTACTCTCTTCTCCAACCTCCCTCACTATCCCTC561960.10783011955277863No Hit
AACACAATAACTCACACCTATAATCCCAACACTTTAAAAAACCAAAACA545910.10475041028731116No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG536050.10285845182266885No Hit
ACTAATTTTTATATTTTTAATAAAAATAAAATTTCACCATATTAACCAA521520.10007040349698396No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)