FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32874076
Sequences flagged as poor quality0
Sequence length30-51
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG1200560.3651996180820413No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTTA556980.1694283361758974No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTTA331240.10076024646289679No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)