FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001721834

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721834
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8361264
Sequences flagged as poor quality0
Sequence length30-51
%GC33

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGAGGCGGAGTTTGTAGTGAGTCGAGATTACGTCGTTGTATTTTAGTTT406740.4864575499589536No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG367180.439144129404358No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTTA129040.15433073276959083No Hit
CGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTG87780.10498412680188067No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTTA83940.1003915197510807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)