FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001721835

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721835
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8361264
Sequences flagged as poor quality0
Sequence length30-51
%GC26

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTACGTTTATTTATTTATTTTTTTAATTATTTTACTTTTTTTTAATTT303170.362588718643497No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA267180.319544987456442No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG258870.30960629876057016No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG246210.294465047389964No Hit
AATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTA181970.21763455860262276No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA149210.17845387970048546No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCA147390.1762771753170334No Hit
ATAAACGACCTCTTTTTACTCTCTTCTCCAACCTCCCTCACTATCCCTC129750.15517988667742103No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCATATTAACCA110870.1325995686776545No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG85880.10271174310487027No Hit
ACTAATTTTTATATTTTTAATAAAAATAAAATTTCACCATATTAACCAA85530.10229314610805257No Hit
ACTAATTTTTATATTTTTAATAAAAACAAAATTTCACCATATTAACCAA84200.10070247752014527No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)