FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38930898
Sequences flagged as poor quality0
Sequence length30-51
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGATGTTAGAGGGGTGTTTTGGGTAATTTTTGGGATTTAGAAGTGAAAGG1011720.2598758446311719No Hit
TGGGTTTTGTTATTTTAATAAATTTTGTTTTTGGGTGGGTGTGGGTATAAT869880.22344205879864368No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATAA805660.2069461639441248No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG606080.1556809709347059No Hit
TGGAGTAATTTAGGTTGGTTTTTATTTATTTTAAATTTTTTTTTGTATGAA569490.14628226659451832No Hit
TGGAAAAAAAGAATTATTTGGATATATAGGTATGGTTTGAGTTATGATATT525740.13504440611670454No Hit
TGGATAATGAATTATAATTAATATTATTAATTAATATTTATTATTAATAAT505970.12996617750764444No Hit
TGGTGGGGATAGTGATGATTATGGTAGTGGAGGTGAAATATGTTTGTGTGT472780.12144081546744695No Hit
TGGAGGAGGAGATTTTATTTTATATTAATATTTATTTTGATTTTTTGGTTA419190.10767539962730888No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)