FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38930898
Sequences flagged as poor quality0
Sequence length30-51
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT1051180.270011752618704No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCG1037870.26659287437962514No Hit
AAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA903070.2319674208388412No Hit
AACTCTACCATCTTAACAAACCCTATTCTTAAATAAATATAAATATAAT700020.1798109049526677No Hit
ACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCA598170.15364916576031717No Hit
AAATAATAAATTACAATATAAAAAATTATTCCAAAACCTAATAAAATAA526370.13520623130758505No Hit
ATAAAAATAACAATAATTATAATAACAAAAATAAAATATACTCATATAT522880.13430977112318343No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCA519980.13356486151436836No Hit
AATATCAAAAAAATACCTTAAATAACCTCTAAAACTCAAAAATAAAAAA497220.1277186054120817No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG492120.12640859196209653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)